PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000265345
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 241aa    MW: 25883.8 Da    PI: 9.2912
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000265345genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004290112123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ykC+ C+k Fs+   L  H  +H
  MDP0000265345  90 YKCSVCNKGFSSYQALGGHKASH 112
                    9***********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.53390117IPR007087Zinc finger, C2H2
PfamPF139127.6E-1390114IPR007087Zinc finger, C2H2
SMARTSM003550.009990112IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.69E-990163No hitNo description
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
PfamPF139121.7E-11140164IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.305141170IPR007087Zinc finger, C2H2
SMARTSM003550.44141163IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280143165IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MALEALKSAS TTTTPSPPFS SFEKVEDRRH GNHQIHSKEP WAKRKRSKRP RSEDPPTEEE  60
YLALCLIMLA RGTTSSSELP PQPPSRDLSY KCSVCNKGFS SYQALGGHKA SHRKSDSSAA  120
AMVDHQIAAA SSVTTTSGRT HECSICHKTF RTGQALGGHK RCHYHGGSAA TSAVTTSEGG  180
GAGASSHSQS HQSQHGFDLN MPALPEFWPG FGGDKKSQLS GEQEVQSPMV GKKPRWLLGG  240
D
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.254900.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008348887.11e-179PREDICTED: zinc finger protein ZAT10-like
SwissprotQ962898e-58ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLD9ZIT31e-134D9ZIT3_MALDO; C2H2L domain class transcription factor
STRINGVIT_03s0091g00690.t011e-78(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.15e-47salt tolerance zinc finger